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Spring 2006

First day of classes: Pitt January 4, 2006; CMU January 16, 2006.

Core courses:

Intro to Parallel Distributed Processing,
Neurophysiology
Systems Neurobiology

Note:  students in the CNBC graduate training program automatically have instructor permission to attend any of these core courses, but cross-registration procedures may apply.


CMU Biological Sciences

03-761 Neural Plasticity in Sensory and Motor Systems: 9 units

  • Instructors: Alison Barth, Nathan Urban, Justin Crowley
  • Date/Time: Mon 2:30 PM - 4:20 PM
  • Location: Mellon Institute 191
  • Prerequisites: Biology 03-360
  • Special Permission Required

Neural plasticity underlies the capacity of the central nervous system to encode new information, develop new abilities and adapt to the environment. Plasticity is required for learning and is modulated during development and by disorders of the brain. Recent advances in experimental methodology have led to new insights on the biological mechanisms underlying neural plasticity. The topics if the papers chosen for review will center on recent experimental and theoretical studies of topics such as synaptic plasticity, developmental and activity-dependent changes in sensory and motor maps.


CMU Computer Science

15-685  Computer Vision: 9/12 units

  • Instructor: Tai Sing Lee
  • Date/Time: Tue & Thu 3:00 PM - 4:20 PM
  • Location: Wean Hall 5403
  • Prerequisites: 15-113 and (18-202 or 21-241)

This course deals with the science and engineering of computer vision, that is, the analysis of patterns in visual images of the world with the goal of reconstructing and understanding the objects and processes in the world that are producing them. The emphasis is on physical, mathematical, and information processing aspects of vision, but biological and psychological perspectives will also be considered. Topics covered include image formation and representation, multi-scale analysis, segmentation, contour and region analysis, reconstruction of depth based on stereo, texture shading and motion, and analysis and recognition of objects and scenes using statistical and model-based techniques.

10-701 Machine Learning: 12 units
(Cross-listed as 15-781 for CS PhD students only.)

  • Instructor: C Guestrin
  • Date/Time: Mon & Wed 10:30 AM - 11:50 AM
  • Location: Wean Hall 7500

It is hard to imagine anything more fascinating than automated systems that improve their own performance. The study of learning from data is commercially and scientifically important. This course is designed to give a graduate-level student a thorough grounding in the methodologies, technologies, mathematics and algorithms currently needed by people who do research in learning and data mining or who may need to apply learning or data mining techniques to a target problem. The topics of the course draw from classical statistics, from machine learning, from data mining, from Bayesian statististics and from statistical algorithmics. Students entering the class with a pre-existing working knowledge of probability, statistics and algorithms will be at an advantage, but the class has been designed so that anyone with a strong numerate background can catch up and fully participate. Due to high demand, this class will also be offered in Spring 2005.
Please refer to this link for the most recent schedule updates.

This course is only available to CSD PhD and 5th year MS students. If you are f rom another department you must register under the number 10-701 (CALD). If you have questions send email to diane@cs.cmu.edu

15-785 Computational Perception and Scene Analysis: 12 units
(Cross-listed as Psychology 85-485/785)

  • Instructor: Mike Lewicki
  • Date/Time: Tue & Thu, 10:30 AM - 11:50 AM
  • Location: Porter Hall A19
  • Prerequisites: CS 15-385 (undergraduate computer vision course), Psych 85-370 (undergraduate perception course), or permission of the instructor.

    The goal of this course is to teach how to reason scientifically about problems and issues in perceptual cognition, how to extract the essential computational properties of those abstract ideas, and finally how to convert these into explicit mathematical models and computational algorithms. The course teaches advanced aspects of perception, scene analysis, and recognition in both the visual and auditory modalities, concentrating on those aspects that allow us and animals to behave in natural, complex environments. Both the experimental approaches of scientific disciplines and the computational approaches of engineering disciplines are emphasized.

    Each topic in the course begins by studying the ethology of natural behaviors, analyzing and decomposing these to identify the essential components that are required for the total behavior in a natural environment. This aspect of the course follows the lines of scientific reasoning and key experiemental results that lead to our current understanding of the important computational problems in perception and scene analysis. The course then surveys the most important solutions to these problems, focusing on the idealizations and simplifications that are sensory coding, perceptual invariance, spatial vision and sound localization, visual and auditory scene segmentation, many aspects of attention, and the basics of objects and speech recognition.


CMU Psychology

85-712 Cognitive Modeling: 9 units

  • Instructor: John Anderson
  • Date/Time: Tue & Thu 10:30 AM -11:50 AM
  • Location: Baker Hall 340J
  • Prerequisites: Special permission required, contact instructor.

This course will be concerned with modeling of cognition. We will use a high-level modeling language to simulate a range of cognitive tasks from the literature on attention, memory, problem solving and skill acquisition. Students will end the course developing a model for a phenomenon of their choosing. The course grade will be determined by a series of assignments involving developing cognitive models and by a written exam.

 

85-714 Cognitive Neuropsychology: 9 units

  • Instructor: Marlene Behrmann
  • Date/Time: Mon & Wed 1:30 PM - 2:50 PM
  • Location: Baker Hall 340A
  • Prerequisites: Special permission required, contact instructor.

This course will review what has been learned of the neural bases of cognition through studies of brain-damaged patients as well as newer techniques such as brain stimulation mapping, regional metabolic and blood flow imaging, and attempt to relate these clinical and physiological data to theories of the mind cast in information-processing terms. The course will be organized into units corresponding to the traditionally-defined subfields of cognitive psychology such as perception, memory and language. In each area, we will ask: To what extent do the neurological phenomena make contact with the available cognitive theories? When they do, what are their implications for these theories (i.e., Can we confirm or disconfirm particular cognitive theories using neurological data?)? When they do not, what does this tell us about the parses of the mind imposed by the theories and methodologies of cognitive psychology and neuropsychology?

 

85-719 Introduction to Parallel Distributed Processing: 9 units

[CNBC Core Course]

  • Instructor: David Plaut
  • Date/Time: Tue & Thu 1:30 PM- 2:50 PM
  • Location: Porter Hall A19
  • Prerequisites: Special permission required, contact instructor.
  • Course home page: http://www.cnbc.cmu.edu/~plaut/85-419/

This course will provide an overview of parallel-distributed processing models of aspects of perception, memory, language, knowledge representation, and learning. The course will consist of lectures describing the theory behind the models as well as their implementation, and students will get hands-on experience running existing simulation models on workstations.

 

85-721 Language & Thought: 9 units

  • Instructor: Brian MacWhinney
  • Date/Time: Mon & Wed 10:30 AM - 11:50 AM
  • Location: Baker Hall 336B
  • Prerequisites: Special permission required, contact instructor.

This course allows the student to explore ways in which the mind shapes language and language shapes the mind. Why are humans the only species with a full linguistic system? Some of the questions to be explored are: What kinds of mental abilities allow the child to learn language? What are the cognitive abilities needed to support the production and comprehension of sentences in real time? How do these abilities differ between people? Are there universal limits on the ways in which languages differ? Where do these limitations come from cognition in general or the specific language facility? Why is it so hard to learn a second language? Are there important links between language change and cultural change that point to links between language and culture?

 

85-729 Cognitive Brain Imaging: 9 units

  • Instructor: Marcel Just
  • Date/Time: Wed 7:00 PM - 8:50 PM
  • Location: Baker Hall 336B
  • Prerequisites: 85211 or 85213 or 85411 or 85412 or 85414 or 85419. Special permission required, contact instructor.

This seminar will examine how the brain executes higher level cognitive processes, such as problem-solving, language comprehension, and visual thinking. The topic will be addressed by examining what recent brain imaging studies can tell us about these various kinds of thinking. This new scientific approach has the potential of providing important information about how the brain thinks, indicating not only what parts perform what function, but also how the activity of different parts of the brain are organized to perform some thinking task, and how various neurological diseases (e.g. aphasia, Alzheimer's) affect brain activity. A variety of different types of thinking will be examined, including short-term working memory storage and computation, problem solving, language comprehension, visual thinking. Several different technologies for measuring brain activity (e.g. PET and functional MRI and also some PET imaging) will be considered, attempting to relate brain physiology to cognitive functioning. The course will examine brain imaging in normal subjects and in people with various kinds of brain damage. Graduate Students Only.

 

85-785 Computational Perception and Scene Analysis: 12 units
(Cross-listed as Computer Science 15-785)

  • Instructor: Mike Lewicki
  • Date/Time: Tue & Thu, 10:30 AM - 11:50 AM
  • Location: Porter Hall A19
  • Prerequisites: CS 15-385 (undergraduate computer vision course), Psych 85-370 (undergraduate perception course), or permission of the instructor.

    The goal of this course is to teach how to reason scientifically about problems and issues in perceptual cognition, how to extract the essential computational properties of those abstract ideas, and finally how to convert these into explicit mathematical models and computational algorithms. The course teaches advanced aspects of perception, scene analysis, and recognition in both the visual and auditory modalities, concentrating on those aspects that allow us and animals to behave in natural, complex environments. Both the experimental approaches of scientific disciplines and the computational approaches of engineering disciplines are emphasized.

    Each topic in the course begins by studying the ethology of natural behaviors, analyzing and decomposing these to identify the essential components that are required for the total behavior in a natural environment. This aspect of the course follows the lines of scientific reasoning and key experiemental results that lead to our current understanding of the important computational problems in perception and scene analysis. The course then surveys the most important solutions to these problems, focusing on the idealizations and simplifications that are sensory coding, perceptual invariance, spatial vision and sound localization, visual and auditory scene segmentation, many aspects of attention, and the basics of objects and speech recognition.

 

85-795 Applications of Cognitive and Perceptual Psychology: 9 units

  • Instructor: R Klatzky
  • Date/Time: Tue & Thu 9:00 AM - 10:20 AM
  • Location: Baker Hall 336B
  • Prerequisites: 85211 or 85310 or 85370
  • Special permission required, contact instructor.

The famous psychologist George Miller once said that Psychology should "give itself away." The goal of this course is to look at cases where we have done so -- or at least tried. The course focuses on applications that are sufficiently advanced as to have made an impact outside of the research field per se. That impact can take the form of a product, a change in practice, or a legal statute. The application should have a theoretical base, as contrasted, say, with pure measurement research as in ergonomics. Examples of applications are virtual reality (in vision, hearing, and touch), cognitive tutors based on models of cognitive processing, phonologically based reading programs, latent semantic analysis applications to writing assessment, and measurses of consumers' implicit attitudes. The course will use a case-study approach that considers a set of applications in detail, while building a general understanding of what it means to move research into the applied setting. The questions to be considered include: What makes a body of theoretically based research applicable? What is the pathway from laboratory to practice? What are the barriers - economic, legal, entrenched belief or practice? The format will emphasize analysis and discussion by students.

85-814 Philosophy of Science: Graphical Models in Cognitive Science: 9 units

  • Instructor: David Danks
  • Date/Time: Tue 1:30 PM - 3:50 PM
  • Location: Baker Hall 150
  • Prerequisites: Please email Dr. David Danks for permission to enroll in graduate level of the course at ddanks@cmu.edu. Once you have permission to register Theresa Kurutz in BH 343 or tk0w@andrew.cmu.edu can register you.

     


CMU Robotics

16-721 Advanced Robot Perception: 12 units

  • Instructor: S Narasimhan
  • Days/Times: Tue & Thu 10:30 AM - 11:50 AM
  • Location: Newell Simon Hall 3002

The goal of this course is to come up to speed with current research in computer vision. The course includes introductory lectures for each topics and presentations/implementations by students based on recent publications in major computer vision conferences and journals. The list of papers and topics is updated every year.

Prerequisites: 15-385. Some reservations are for Graduate Students in Robotics


16-725 Medical Image Analysis: 12 units

  • Instructor: George Stetten, Yanxi Liu, Jonas August
  • Date/Time: Tue & Thu, 9:30 AM - 10:50 AM
  • Location: TBA
  • Prerequisites: Permission of the instructor, knowledge of C++, vector calculus and basic probability.

The fundamentals of computational medical image analysis will be explored, leading to current research in applying geometry and statistics to segmentation, registration, visualization, and image understanding. Student will develop practical experience through projects using the National Library of Medicine Insight Toolkit (ITK), a new software library developed by a consortium of institutions including CMU. In addition to image analysis, the course will describe the major medical imaging modalities and include interaction with practicing radiologists at UPMC.


16-779 Human Systems & Control: 12 units

  • Instructor: George Stetten, Yanxi Liu, Jonas August
  • Date/Time: Mon & Wed, 3:00 PM - 4:20 PM
  • Location: Newell-Simon Hall 3002

This course covers the mechanisms of human motor systems and control, using arm movements as an example. The course starts from the anatomy of muscles, sensors, spinal cord, and brain; then functional analysis of these system components will follow. After system analysis, all components are integrated to study feedback control dynamics. Using physiological studies such as psychophysical and lesion experiments, the course covers classic to modern theories of how the nervous systems may control movements. Advance topics include adaptation, representation, coordinate systems, cognitive involvement, and rehabilitation techniques for motor impaired patients.


CMU Statistics

36-746 Statistical Methods for Neuroscience: 12 units

  • Instructor: Robert Kass
  • Days/Times: Tue & Thu 10:30am - 11:50am
  • Location: Mellon Institute 115

This course provides a brief survey of statistical methods that are of use in cognitive neuroscience. The first part of the course will present a compressed version of material often covered in a semester-long course in elementary statistics. The latter part of the course will introduce various more advanced methods. Topics include Probability (laws of probability, conditional probability, Bayes' Theorem, random variables, Binomial, Poisson, and Normal distributions, and Poisson and other point processes), Exploratory Data Analysis (Descriptive methods for single samples and multiple samples, scatterplot smooths, histograms, and density estimators), Elementary Statistical Inference (standard errors and confidence intervals, goodness-of-fit and significance tests, ANOVA and regression, and maximum likelihood and Bayesian inference). Additional topics may include Bayesian classification, ROC curves, Information theory, Fourier analysis and signal processing, Multivariate analysis, PCA and ICA, the Bootstrap, nonparametric regression, and integrate-and-fire models.


Pitt Mathematics

MATH 3370 Mathmatical Neuroscience CR HRS: 3.0

  • Instructor: Bard Ermentrout
  • Days/Times: TBA
  • Location: TBA

This is a course which emphasizes the applications of dynamical systems and pattern formation methods to problems from neuroscience. Students should have a solid understanding of differential equations and linear algebra. We will start with action potential propagation and the existence and stability of traveling waves. We will look at how noise affects the firing rates of neurons -- all of the required stochastic techniques will be introduced. We then turn to synaptically coupled neural oscillators and develop map based and averaging theory to study phase-locking. We then explore large scale networks and pattern of connections such as the formation of occular dominance columns and traveling wave solutions. No neuroscience is required -- all the necessary background is provided by the instructor.


Pitt Psychology

PSY 2470 Human Cognition: Skill Acquisition CR HRS: 2.0

  • Instructor: Christian Diter Schunn
  • Days/Times: Mon & Wed 1:30 PM - 2:50 PM
  • Location: Learning Research & Development Center TBA

This course will introduce the foundational theories and issues in research on skill acquisition, problem solving, and reasoning. Core questions include: what is the nature of expert problem solving and reasoning, what changes cognitively as an individual moves from novice to expert, and what factors influence who becomes an expert and how quickly they get there? This course focuses on the skills that experts develop rather than the knowledge they have, although the interrelationship of knowledge and skill will be examined. We will also examine research methods used in this area, in other words how human problem solving and reasoning can be studied scientifically, and why the results of experimental investigations support particular theories of human skill acquisition, problem solving, and reasoning.

PSY 2476 Seminar in Cognitive Psychology - Imaging CR HRS: 2.0-3.0

  • Instructor: Walter Schneider
  • Days/Times: Mon & Wed 3:00 PM - 4:30 PM
  • Location: Learning Research and Development Center TBA

This course will provide an opportunity for students to design an fMRI experiment, to acquire a reasonable quantity of pilot data, and to analyze the data. This course will provide in-depth coverage of simulations that can inform planned experimental contrasts, and it will give students a rich understanding of the quantitative issues that underlie image pre-processing (e.g., effects of different registration and normalization procedures) and data analysis (e.g., the use of GLM-based techniques for fast event-related designs, approaches to investigating functional interconnectivity). This is a laboratory course. There will be a two hours of lecture and 2-4 hours laboratory time per week. We anticipate that some of the students will complete the semester with an exciting body of pilot data and a strong interest in further fMRI research. There will be an opportunity for students to apply for additional imaging hours to extend their pilot project. Students without prior neuroimaging exposure (obtained through the fall seminar course or their own research labs) must obtain permission from the instructor to enroll in this class. This will be a laboratory course. It will meet in a computer room and about half of the time will be hands on use of tools for research. It will describe multiple packages but the recommended packages for exercises will be BrainVoyager QX. This course will involve student getting hands on experience with design, creation, running and analysis of fMRI experiments. At the end of the course the student should be able to design, run and analyze fMRI type experiments at a level appropriate for publication. Students that have created solid high quality paradigms and verified those paradigms in simulation and analysis procedures will be provide some MRI time to enable human running of subjects. Students are also encouraged to participate in experiments of other students and to provide base data for experiments. Students will propose a formal experiment and collect some exploratory data.

PSY 2476 Seminar in Cognitive Psychology - Computational Modeling CR HRS: 2.0-3.0

  • Instructor: Erik Daniel Reichle
  • Days/Times: Tue 4:00 PM - 6:50 PM
  • Location: Learning Research and Development Center TBA

This course will provide an introduction to the methodology of computational modeling in cognitive psychology. The main objectives of this course are to foster a basic understanding of the various approaches to modeling and an appreciation of the many practical and philosophical issues that modelers must consider when they develop their models. The first part of the course will focus on several of these issues, including (but not limited to) the following questions: (1) What are computational models of cognition? (2) What are the major approaches (e.g., production systems, PDP, etc.) that have been used to model cognitive processes? (3) How are models designed and tested? (4) How are models evaluated? The second part of the course will address these issues in a more concrete manner by way of two comparative analyses of models that have been developed to account for phenomena in two areas of cognitive research: general episodic memory (e.g., recognition, recall, etc.), and eye-movement control during reading. The third part of the course will consist of student-led discussions of seminal modeling papers from the students' areas of research. During the final part of the course, students will be required to complete a modeling project or to write a comprehensive review of existing models within their area of research. Although this class assumes no prior knowledge of modeling, basic math proficiency and computer programming skills are necessary.


Pitt Neuroscience

NROSCI 2012 Neurophysiology: CR HRS: 3.0

[CNBC Core Course]

  • Instructor: Jon W. Johnson
  • Days/Times: Tue & Thu 11:00 - 12:15pm
  • Location: Langley Hall A224

In this course we will examine the functioning of neurons and synapses, the basic units responsible for fast communication within the nervous system. The course will focus on the elegant use of electrical mechanisms by the nervous system, and on the powerful quantitative approach to scientific investigation that is fundamental to neurophysiology. Topics that will be addressed include: principles of electric current flow exploited by the nervous system; the basis of the resting potential of neurons; the structure and function of voltage-gated and neurotransmitter-gated ion channels; generation and propagation of action potentials; the physiology of fast synaptic communication.

 

NROSCI 2035 Control of Movement CR HRS: 3.0

  • Instructor: Mark Sommer
  • Days/Times: Mon & Wed 2:00 PM - 3:20 PM, Fri 2:30 PM - 3:25 PM
  • Location: Mellon Institute 115

This course will discuss the neural control of our actions in detail, including planning of movement in the cortex, relay of motor commands to the brainstem and spinal cord, coordination of movement by the cerebellum and basal ganglia, adjustment of movement via brainstem and spinal cord reflexes, execution of movement through contraction of muscle fibers, and feedback about movement as mediated by corollary discharge circuits. The focus will be on basic science, supplemented by reviews of clinical issues. Course format will include lectures and discussions of original research papers.

 

NROSCI/MSNBIO 2102 Systems Neurobiology: CR HRS: 6.0

[CNBC Core Course]

  • Instructor: Dan Simons
  • Days/Times: Mon & Wed 9:00 - 10:20am, Fri 9:00 - 10:55am
  • Location: Victoria Hall 117
  • Prerequisites: MSNBIO 2100 OR NROSCI 2100 (Cellular and Molecular Neurobiology), or INTBP 2000 (Foundations in Biomedical Science), or permission of the instructor. A background in basic biology is required. If students have not had college biology courses, they must obtain consent of the instructor to enroll.

This course is a component of the introductory graduate sequence designed to provide an overview of neuroscience. This course provides an introduction to the structure of the mammalian nervous system and to the functional organization of sensory systems, motor systems, regulatory systems, and systems involved in higher brain functions. It is taught primarily in a lecture format with some laboratory work. The course covers in detail the major sensory, motor and behavioral regulatory systems of the brain. The course satisfies the CNBC core requirement in neuroanatomy.

 

NROSCI 3023 Seminar in Cognitive Neuroscience: CR HRS: 1.0 to 3.0

  • Instructors: Carl Olson, Carol Colby, James Mcclelland
  • Location: Mellon Institute
  • Days/Times: By Appointment

    This is a journal club devoted to cognitive neuroscience.