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Spring 2007

First day of classes: Pitt January 3, 2007; CMU January 15, 2006.

Core courses:

Intro to Parallel Distributed Processing,
Computational Neuroscience Methods
Neurophysiology
Systems Neurobiology

Note:  students in the CNBC graduate training program automatically have instructor permission to attend any of these core courses, but cross-registration procedures may apply.


CMU Biological Sciences

03-761 Neural Plasticity in Sensory and Motor Systems: 9 units

  • Instructors: Alison Barth, Nathan Urban, Justin Crowley
  • Date/Time: Mon 2:30 PM - 4:20 PM
  • Location: Mellon Institute 191
  • Prerequisites: Biology 03-360
  • Special Permission Required

Neural plasticity underlies the capacity of the central nervous system to encode new information, develop new abilities and adapt to the environment. Plasticity is required for learning and is modulated during development and by disorders of the brain. Recent advances in experimental methodology have led to new insights on the biological mechanisms underlying neural plasticity. The topics if the papers chosen for review will center on recent experimental and theoretical studies of topics such as synaptic plasticity, developmental and activity-dependent changes in sensory and motor maps.

03-815 Magnetic Resonance Imaging in Neuroscience: 9 units

  • Instructors: Eric Ahrens
  • Date/Time: Tues & Thu 3:00 PM - 4:20 PM
  • Location: Mellon Institute 448

The course is designed to introduce students to the fundamental principles of magnetic resonance imaging (MRI) and its application in neuroscience. MRI is emerging as the preeminent method to obtain structural and functional information about the living human brain. This methodology has helped to revolutionize neuroscience and the study of human cognition. The specific topics covered in this course will include: introduction to spin gymnastics, survey of imaging methods, structural brain mapping, functional MRI (fMRI), and MR spectroscopy (MRS). Approximately, one third of the course will be devoted to introductory concepts of magnetic resonance, another third to the discussion of MRI methods, and the remaining third will cover a broad range of neuroscience applications. Guest lectures will be incorporated into the course from neuroscientists and psychologists who use MRI in their own research.


CMU Computer Science

15-685  Computer Vision: 9/12 units

  • Instructor: Srinivasa Narasimhan
  • Date/Time: Tue & Thu 3:00 PM - 4:20 PM
  • Location: Wean Hall 5403

This course deals with the science and engineering of computer vision, that is, the analysis of patterns in visual images of the world with the goal of reconstructing and understanding the objects and processes in the world that are producing them. The emphasis is on physical, mathematical, and information processing aspects of vision, but biological and psychological perspectives will also be considered. Topics covered include image formation and representation, multi-scale analysis, segmentation, contour and region analysis, reconstruction of depth based on stereo, texture shading and motion, and analysis and recognition of objects and scenes using statistical and model-based techniques.

10-701 Machine Learning: 12 units
(Cross-listed as 15-781 for CS PhD students only.)

  • Instructor: Carlos Guestrin
  • Date/Time: Mon & Wed 10:30 AM - 11:50 AM
  • Location: Wean Hall 7500

It is hard to imagine anything more fascinating than automated systems that improve their own performance. The study of learning from data is commercially and scientifically important. This course is designed to give a graduate-level student a thorough grounding in the methodologies, technologies, mathematics and algorithms currently needed by people who do research in learning and data mining or who may need to apply learning or data mining techniques to a target problem. The topics of the course draw from classical statistics, from machine learning, from data mining, from Bayesian statististics and from statistical algorithmics. Students entering the class with a pre-existing working knowledge of probability, statistics and algorithms will be at an advantage, but the class has been designed so that anyone with a strong numerate background can catch up and fully participate. Due to high demand, this class will also be offered in Spring 2005.
Please refer to this link for the most recent schedule updates.

This course is only available to CSD PhD and 5th year MS students. If you are f rom another department you must register under the number 10-701 (CALD). If you have questions send email to diane@cs.cmu.edu

15-686 Computational Neuroscience: Visual Computation in Biological Systems: 12 units

  • Instructor: Tai Sing Lee
  • Date/Time: Tue & Thu, 3:00 PM - 4:20PM
  • Location: Porter Hall A18B

    An introduction to the computational neuroscience of vision. This course explores basic neuroscience, as well as the computational principles and mathematical foundations that are relevant to understanding intelligent computation in biological visual systems. Fundamental concepts on signals and systems, pattern analysis, probabilistic inference, representation learning, information and coding theories will be covered in the context of sensory and perceptual processing in the visual systems. Basic knowledge of the biophysics of neurons, neural anatomy and physiology of the visual system, psychological and computational approaches to visual perception and object recognition will be introduced. No prior background in biology or psychology is required. At least one course in computer programming, one course in linear algebra and one course in differential equations or probability are mandatory. Students will master the core concepts and techniques by engaging in a number of Matlab and mathematical exercises, and a term project on related topics.15-686 option requires additional weekly meeting to discuss current papers on visual computation.


CMU Psychology

85-712 Cognitive Modeling: 9 units

  • Instructor: John Anderson
  • Date/Time: Tue & Thu 10:30 AM -11:50 AM
  • Location: Baker Hall 340J
  • Prerequisites: Special permission required, contact instructor.

This course will be concerned with modeling of cognition. We will use a high-level modeling language to simulate a range of cognitive tasks from the literature on attention, memory, problem solving and skill acquisition. Students will end the course developing a model for a phenomenon of their choosing. The course grade will be determined by a series of assignments involving developing cognitive models and by a written exam.

 

85-714 Cognitive Neuropsychology: 9 units

  • Instructor: Brent Vander Wyk
  • Date/Time: Mon & Wed 1:30 PM - 2:50 PM
  • Location: Baker Hall 340A
  • Prerequisites: Special permission required, contact instructor.

This course will review what has been learned of the neural bases of cognition through studies of brain-damaged patients as well as newer techniques such as brain stimulation mapping, regional metabolic and blood flow imaging, and attempt to relate these clinical and physiological data to theories of the mind cast in information-processing terms. The course will be organized into units corresponding to the traditionally-defined subfields of cognitive psychology such as perception, memory and language. In each area, we will ask: To what extent do the neurological phenomena make contact with the available cognitive theories? When they do, what are their implications for these theories (i.e., Can we confirm or disconfirm particular cognitive theories using neurological data?)? When they do not, what does this tell us about the parses of the mind imposed by the theories and methodologies of cognitive psychology and neuropsychology?

 

85-719 Introduction to Parallel Distributed Processing: 9 units

[CNBC Core Course]

  • Instructor: Brent Vander Wyk
  • Date/Time: Tue & Thu 1:30 PM- 2:50 PM
  • Location: Porter Hall A19
  • Prerequisites: Special permission required, contact instructor.

This course will provide an overview of parallel-distributed processing models of aspects of perception, memory, language, knowledge representation, and learning. The course will consist of lectures describing the theory behind the models as well as their implementation, and students will get hands-on experience running existing simulation models on workstations.

 

85-721 Language & Thought: 9 units

  • Instructor: Brian MacWhinney
  • Date/Time: Mon & Wed 10:30 AM - 11:50 AM
  • Location: Baker Hall 336B
  • Prerequisites: Special permission required, contact instructor.

This course allows the student to explore ways in which the mind shapes language and language shapes the mind. Why are humans the only species with a full linguistic system? Some of the questions to be explored are: What kinds of mental abilities allow the child to learn language? What are the cognitive abilities needed to support the production and comprehension of sentences in real time? How do these abilities differ between people? Are there universal limits on the ways in which languages differ? Where do these limitations come from cognition in general or the specific language facility? Why is it so hard to learn a second language? Are there important links between language change and cultural change that point to links between language and culture?

 

85-723 Cognitive Development: 9 units

  • Instructor: Robert Seigler
  • Date/Time: Tue & Thu 1:30 PM - 2:50 PM
  • Location: Baker Hall 340J
  • Special permission required, contact instructor.

The general goals of this course are that students become familiar with the basic phenomena and the leading theories of cognitive development, and that they learn to critically evaluate research in the area. Piagetian and information processing approaches will be discussed and contrasted. The focus will be upon the development of childrens information processing capacity and the effect that differences in capacities have upon the childs ability to interact with the environment in problem solving and learning situations. Graduate students only.

 

85-729 Cognitive Brain Imaging: 9 units

  • Instructor: Marcel Just
  • Date/Time: Wed 7:00 PM - 8:50 PM
  • Location: Baker Hall 336B
  • Prerequisites: 85211 or 85213 or 85411 or 85412 or 85414 or 85419. Special permission required, contact instructor.

This seminar will examine how the brain executes higher level cognitive processes, such as problem-solving, language comprehension, and visual thinking. The topic will be addressed by examining what recent brain imaging studies can tell us about these various kinds of thinking. This new scientific approach has the potential of providing important information about how the brain thinks, indicating not only what parts perform what function, but also how the activity of different parts of the brain are organized to perform some thinking task, and how various neurological diseases (e.g. aphasia, Alzheimer's) affect brain activity. A variety of different types of thinking will be examined, including short-term working memory storage and computation, problem solving, language comprehension, visual thinking. Several different technologies for measuring brain activity (e.g. PET and functional MRI and also some PET imaging) will be c onsidered, attempting to relate brain physiology to cognitive functioning. The course will examine brain imaging in normal subjects and in people with various kinds of brain damage. Graduate Students Only.

 

85-795 Applications of Cognitive and Perceptual Psychology: 9 units

  • Instructor: Roberta Klatzky
  • Date/Time: Tue & Thu 9:00 AM - 10:20 AM
  • Location: Baker Hall 336B
  • Prerequisites: 85211 or 85310 or 85370
  • Special permission required, contact instructor.

The famous psychologist George Miller once said that Psychology should "give itself away." The goal of this course is to look at cases where we have done so -- or at least tried. The course focuses on applications that are sufficiently advanced as to have made an impact outside of the research field per se. That impact can take the form of a product, a change in practice, or a legal statute. The application should have a theoretical base, as contrasted, say, with pure measurement research as in ergonomics. Examples of applications are virtual reality (in vision, hearing, and touch), cognitive tutors based on models of cognitive processing, phonologically based reading programs, latent semantic analysis applications to writing assessment, and measurses of consumers' implicit attitudes. The course will use a case-study approach that considers a set of applications in detail, while building a genera l understanding of what it means to move research into the applied setting. The questions to be considered include: What makes a body of theoretically based research applicable? What is the pathway from laboratory to practice? What are the barriers - economic, legal, entrenched belief or practice? The format will emphasize analysis and discussion by students.

 

85-804 Research Topics in Cognitive Neuroscience: 3 units

  • Instructor: Carl Olson
  • Date/Time: Mon 5:30 PM - 6:50 PM
  • Location: Mellon Institute 115
  • Prerequisites: For Graduate Students only. Please email Dr. Carl Olson at colson@cmu.edu for permission to enroll. Once you have instructors permission, Theresa Kurutz at tk0w@andrew.cmu.edu can register you in the course.

CMU Robotics

16-721 Learning-based Methods in Vision: 12 units

  • Instructor: Alexei Efros
  • Days/Times: Tue & Thu 10:30 AM - 11:50 AM
  • Location: Newell Simon Hall 3002
  • Prerequisites: 16-720 Graduate Computer Vision

A graduate seminar course in Computer Vision with emphasis on using large amounts of real data (images, video, textual annotations, user preferences, etc) to learn the structure of our visual world toward the ultimate goal of Image Understanding. We will be reading an eclectic mix of classic and recent papers on topics including: theories of perception, low-level vision (color, texture), mid-level vision (grouping and segmentation), object and scene recognition, image parsing, words and pictures models, image manifolds, etc.


CMU Statistics

36-900 Time Series and Point Processes CR: 12 units

  • Instructor: Rob Kass
  • Days/Times: tentatively Tue/Thu 10;30 am - 11:50 am
  • Location: tentatively CFA-213
This seminar-style course will review essential methods of time series and point processes, with an emphasis on interpretation, particularly in the context of neuroscientific applications. There, the continuous signals of interest would be such things as local field potentials, EEGs, or EMGs (or possibly any of several imaging modalities), and the point processes would be spike trains.

Topics will likely include most of the following: elements of Fourier analysis; harmonic analysis of time series; stationary processes and spectral analysis; the Hilbert transform; cross-correlation and coherence; time-domain methods; multitaper methods; wavelets; spectrograms and nonstationarity; Poisson and non-Poisson point process models; cross-correlation methods for point processes; cross-correlation between point processes and continuous processes. Students will be welcomed to suggest topics.


Pitt Mathematics

MATH 3375 Computational Neuroscience Methods CR HRS: 3.0
(formerly called Introduction to Computational Neuroscience)

[CNBC Core Course]
  • Instructor: Jonathan Rubin
  • Days/Times: TBA
  • Location: TBA

This course offers an introduction to modeling methods in Neuroscience. Topics range from modeling the firing patterns of single neurons to using computational methods to understand neural coding. Some systems level modeling is also done.


Pitt Psychology

PSY 2135 Social Perception & Cognition CR HRS: 3.0

  • Instructor: William Klein
  • Days/Times: Tue 1:00 PM - 3:55 PM
  • Location: SENSQ 04125

Focuses on how we perceive social objects (ourselves and other people). Topics include cognitive processes underlying social perception (e.g., mental representations, hypotheses testing implicit cognition, and use of judgmental heuristics) and basic social psychological processes such as attribution, norm perception, social comparison, stereotypes, detecting emotions and deception, and self-fulfilling prophecies. Addresses motives that influence social perception processes, and the role that the self plays as both an antecedent and consequence of these processes. Attention will also be paid to individual and cultural differences in social cognition. Basic knowledge of social psychology prior to enrollment strongly encouraged.

PSY 2476 Seminar in Cognitive Psychology: Cognitive Neuroscience of Human learning and Instruction - CR HRS: 1.0-4.0

  • Instructor: Walter Schneider
  • Days/Times: Mon 11:30 AM - 1:55 PM
  • Location: Learning Research and Development Center TBA

This seminar examines the biological basis of human learning and the implications for effective instruction. This course will address meeting the Bruer Challenge of relating the brain and education through the use of models and understanding the processes tha produce robust learning. The seminar will provide a scientific perspective how neuroscience can inform learning science. The topics will include: learning: neural plasticity, brain development, cognitive neuroscience of knowledge representation, episodic and procedural memory, reinforcement, attentional mechanisms, and affect processing. Applied instructional topics will include: learning from math, reading, physics and art. We expect to build a solid scientific bridge from neuroscience mechanisms, to models of learning and cognitive performance, to understanding and enhancement of human learning. Syllabus and details are available at http://Schneider.lrdc.pitt.edu/p2476

PSY 2476 Seminar in Cognitive Psychology CR HRS: 1.0-4.0

  • Instructor: Michelene Chi
  • Days/Times: Tue 1:30 PM - 4:20 PM
  • Location: Learning Research and Development Center TBA

The goal of this seminar is to consider and segregate the contributions to learning from being active, constructive, and interactive. We will read more recent articles from the cognition and instruction literature, focusing on teasing apart these three models of processing in order to infer and attribute more accurately the causal links between learning and being active, constructive and interactive. The requirement of this seminar is two short papers on the topic that expand beyond the articles read in class. The seminar will take several formats that have been proposed as effective instructional methods.


Pitt Neuroscience

NROSCI 2012 Neurophysiology: CR HRS: 3.0

[CNBC Core Course]

  • Instructors: Jon Johnson and Nathan Urban
  • Days/Times for undergrad lectures: Tue & Thu 11:00 - 12:15pm
  • Location: Langley Hall A224
  • Days/Times for graduate supplement lectures: TBA, but tentatively Tue 5:00 - 6:00 pm
  • Prerequisites: NROSCI 1000, CHEM 0120, PHYS 0110 & 0111, MATH 0220

In this course we will examine the functioning of neurons and synapses, the basic units responsible for fast communication within the nervous system. The course will focus on the elegant use of electrical mechanisms by the nervous system, and on the powerful quantitative approach to scientific investigation that is fundamental to neurophysiology. Topics that will be addressed include: principles of electric current flow exploited by the nervous system; the basis of the resting potential of neurons; the structure and function of voltage-gated and neurotransmitter-gated ion channels; generation and propagation of action potentials; the physiology of fast synaptic communication.

 

NROSCI 2035 Control of Movement CR HRS: 3.0

  • Instructor: Marc Sommer
  • Days/Times: Mon & Wed 2:00 PM - 3:20 PM, Fri 2:30 PM - 3:25 PM
  • Location: TBA

This course will discuss the neural control of our actions in detail, including planning of movement in the cortex, relay of motor commands to the brainstem and spinal cord, coordination of movement by the cerebellum and basal ganglia, adjustment of movement via brainstem and spinal cord reflexes, execution of movement through contraction of muscle fibers, and feedback about movement as mediated by corollary discharge circuits. The focus will be on basic science, supplemented by reviews of clinical issues. Course format will include lectures and discussions of original research papers.

 

NROSCI/MSNBIO 2102 Systems Neurobiology: CR HRS: 6.0

[CNBC Core Course]

  • Instructor: Dan Simons
  • Days/Times: Mon & Wed 9:00 - 10:20am, Fri 9:00 - 11:55am
  • Location: Victoria Hall 117
  • Prerequisites: MSNBIO 2100 OR NROSCI 2100 (Cellular and Molecular Neurobiology), or INTBP 2000 (Foundations in Biomedical Science), or permission of the instructor. A background in basic biology is required. If students have not had college biology courses, they must obtain consent of the instructor to enroll.

This course is a component of the introductory graduate sequence designed to provide an overview of neuroscience. This course provides an introduction to the structure of the mammalian nervous system and to the functional organization of sensory systems, motor systems, regulatory systems, and systems involved in higher brain functions. It is taught primarily in a lecture format with some laboratory work. The course covers in detail the major sensory, motor and behavioral regulatory systems of the brain. The course satisfies the CNBC core requirement in neuroanatomy.

 

MSNBIO 2632 Advanced Neurophysiology

  • Instructors: Andrew Schwartz and Doub Weber
  • Location McGowan Center
  • Days/Times: Tue/Thu 1:00 pm - 2:30 pm

The primary objective of this course is for students to develop critical scientific reasoning by learning to evaluate the essential components of classic research presented in well-written papers. Secondarily, students will gain a solid foundation in neurophysiology by examining, in detail, the underlying principles underlying current flow through a neuron's membrane, the generation and propagation of action potentials, synaptic transmission at the neural muscular junction, and sensory transduction. Course material will consist of papers from Hodgkin, Huxley, Katz, Fatt and others. Complimenting the classic papers will be contemporary work on the same topic.

Students will be expected to have a fundamental understanding of Donnan equilibrium and membrane physiology. Students should have a basic understanding of electrostatics, and an understanding of differential equations.

 

NROSCI 3023 Seminar in Cognitive Neuroscience: CR HRS: 1.0 to 3.0

  • Instructors: Carl Olson, Carol Colby
  • Location: Mellon Institute
  • Days/Times: By Appointment

    This course will cover current readings in cognitive neuroscience, with a dual emphasis on (1) single-neuron recording studies in monkeys and (2) neuropsychological and computational findings directly relevant to nonhuman primate models. Students will present and discuss selected primary research papers.